Public Lab Research note


Infrared Insect Microscopy

by MaggPi |

Read more: publiclab.org/n/16540


Summary:This research note shows microscopic images/ videos of three insects observed with white and IR (850nm/940nm) LED light. The images show that viewing insect internal features is possible.

Introduction: This note demonstrates that DIY microscope kits such as https://www.kickstarter.com/projects/publiclab/the-community-microscope-kit , can be modified with a Raspberry Pi NoIR camera and IR LEDs to obtain infrared images. One reason to adapt microscopes for IR imaging is that many insect parts are transparent when viewed with infrared light. Insect infrared observations have been done since 2005 using a variety of IR photomicroscopy techniques ( http://www.microscopy-uk.org.uk/mag/indexmag.html?http://www.microscopy-uk.org.uk/mag/artoct05/dwd50ir.html ). Adapting microscopes with a Raspberry PI NoIR camera/ IR LEDs extends the range of these techniques by permitting high definition video, real time image processing and multispectral imaging.

Procedure: Microscope modifications: -The general approach is to combine a Raspberry Pi NoIR camera with a microscope objective. One possible method is to use a camera holder such as: https://publiclab.org/notes/partsandcrafts/11-26-2017/building-a-raspberry-pi-microscope

-Lighting modifications:Push button switches were used to toggle between different wavelengths. Two LEDS were used for IR viewing.

-Two 850nm LEDs connected to push button switch
-Two 940 nm LEDs connected to push button switch
-One white LED  connected to push button switch

-Video Processing-Since IR images have a washed out effect, video was adjusted for high contrast (80 picamera settings). This adjustment makes a noticeable difference in being able to detect internal features. Video was captured and displayed (on youtube) in h264 format.

-Bug collection - Sticky paper on top of light (sticky side up) placed outdoors at night. Typically is takes less then 20 minutes to collect bug samples. Paper (with bug) is then cut for mounting on microscope stage.

Insect Infrared Microscope Examples:


Slide1.JPG

-Bug 1a video (center) shows circulation/pumping action/850 nm view https://youtu.be/4D7N47cHwHA

-Bug 1b video (head) shows head internal features /850nm view https://youtu.be/F-Pif_V5uEE


Slide2.JPG

-Bug 2 video (center) shows circulation/pumping action/850nm and 940nm views https://youtu.be/keh14V4n7Vg


Slide3.JPG

-Bug 3 video (head) shows pumping action/850nm and 940nm views https://youtu.be/WOMTCmb2dVw


@warren, @icarito, @amirberAgain

Related posts:

https://publiclab.org/notes/MaggPi/06-05-2018/usb-webcam-vs-raspberry-pi-v2-field-of-view-fov-comparison-community-microscope-initial-evaluation-2

https://youtu.be/I99p_4ypk_c


I did this Help out by offering feedback!


People who did this (0)

None yet. Be the first to post one!



This is marked this as an activity for others to try.
Try it now   Click here to add some more details.


pi raspberry microscope multispectral-imaging gsoc-2018 community-microscope noir

activity:microscope


5 Comments

This is so cool!!!!


😀


Wow, this is amazing! I was wondering what this might look like... I'm excited to try to replicate this one!


This is interesting, did you try to re-focus for the NIR LEDs? It's very likely that the lens wasn't designed for these wavelengths and re-focusing would let you capture images as sharp with those LEDs as well. Also, IDK about those insects specifically, but using a <400 nm LED could show some fluorescence.

Is this a question? Click here to post it to the Questions page.


Great idea @amirberagain. @maggpi if you have a chance to record video of a live insect's face that would be so cool... 🐜


You must be logged in to comment.