Near-Infrared Camera
near-infrared-camera

_The Infragram Kickstarter video, a great introduction to the project._ ###Introduction Vineyards, large farms, and NASA all use **near-infrared photography** for assessing plant health, usually by mounting expensive sensors on airplanes and satellites. At Public Lab, **we've developed a Do-It-Yourself way to take these kinds of photos**, enabling us to monitor our environment through quantifiable data. Our technique uses a modified digital camera to capture near-infrared and blue light in the same image, but in different color channels. We then [post-process the image](#How+to+process+your+images:) (using [Infragram.org](http://infragram.org)) to attempt to infer how much it is photosynthesizing. This allows us to better understand and quantify how much of the available light plants are metabolizing into sugar via photosynthesis. > You can do this yourself (as with all Public Lab tools) but there is also an [Infragram DIY Filter Pack](http://store.publiclab.org/products/infragram-diy-filter-pack) available in the Public Lab Store. We [ran a Kickstarter](http://kickstarter.com/projects/publiclab/infragram-the-infrared-photography-project/) for a version of this camera we call the **Infragram**. [Read more about it here »](/wiki/infragram) Here's the video from the Kickstarter, which offers a nice visual explanation of the technique: ###What is it good for? Multispectral or infrared/visible photography has seen a variety of applications in the decades [since it was developed](#Background:+satellite+infrared+imaging). We have focused on the following uses: - Take pictures to examine plant health in backyard gardens, farms, parks, and nearby wetlands - Monitor your household plants - Teach students about plant growth and photosynthesis - Create exciting science fair projects - Generate verifiable, open environmental data - Check progress of environmental restoration projects - Document unhealthy areas of your local ecology (for instance, algal blooms) Notable uses include [this photograph of an unidentified plume of material in the Gowanus Canal](/notes/liz/8-3-2011/infrared-balloon-image-reveals-gowanus-plume) (and [writeup by TechPresident](http://techpresident.com/blog-entry/how-diy-science-solving-ecological-mysteries-new-york-city)) and a variety of projects at a small farm in New Hampshire [at the annual iFarm event](/tag/ifarm). The [Louisiana Universities Marine Consortium](http://lumcon.edu) has also [collaborated with Public Lab contributors to measure wetlands loss](/notes/shannon/5-29-2011/plots-and-lumcon-collaboration) following the Deepwater Horizon oil disaster. **Here's an example** of what one of our "Infragram" cameras sees (left) and the post-processing analysis which shows photosynthetic activity, or plant health (right). This picture was taken from a commercial airplane flight: [![infragram](https://i.publiclab.org/system/images/photos/000/000/424/medium/aerial-split.jpg)](https://i.publiclab.org/system/images/photos/000/000/424/original/aerial-split.jpg) ###How does it work? **Camera modification:** We've worked on several different techniques, from [dual camera systems](/wiki/dual-camera-kit-guide) to the current, single-camera technique. This involves removing the infrared-blocking filter from [almost any digital camera](/tag/infragram-conversion), and adding a [specific blue filter](/wiki/infragram#Filters). ![swap.png](https://i.publiclab.org/system/images/photos/000/000/376/medium/swap.png) This filters out the red light, and **measures infrared light in its place** using a piece of carefully chosen "NGB" or "infrablue" filter. Read more about [the development of this technique here](http://publiclab.org/notes/cfastie/04-20-2013/superblue). You can also learn more about how digital camera image sensors detect colors [at this great tutorial by Bigshot](http://www.bigshotcamera.com/learn/image-sensor/index). **Post-processing:** Once you take a multispectral photograph with a modified camera, you must [post-process it](#How+to+process+your+images:), compositing the infrared and visible data to generate a new image which (if it works) displays healthy, photosynthetically active areas as bright regions. An in-depth article on the technique by Chris Fastie (albeit using red instead of blue for visible light) [can be found here](/wiki/ndvi-plots-ir-camera-kit). **History of the project:** While we used to use a two-camera system, [research by Chris Fastie](/notes/cfastie/04-20-2013/superblue) and [other Public Lab contributors](/tag/near-infrared-camera) have led to the use of a **single camera which can image in both infrared and visible light simultaneously**. The Infrablue filter is just a piece of carefully chosen theater gel which was examined using [a DIY spectrometer](/wiki/spectrometer). You can use this filter to turn most webcams or cheap point-and-shoots into an infrared/visible camera. ###Background: satellite infrared imaging The study of Earth's environment from space got its start in 1972 when the first Landsat satellite was launched. The multispectral scanner it carried, like the scanners on all subsequent Landsat satellites, recorded images with both visible and near infrared light. Remote sensing "scientists" quickly learned that by combining visible and infrared data, they could reveal critical information about the health of vegetation. For example, the normalized difference vegetation index (NDVI) highlights the difference between the red and infrared wavelengths that are reflected from vegetation. Because red light is used by plants for photosynthesis but infrared light is not, NDVI allows "scientists" to estimate the amount of healthy foliage in every satellite image. Thousands of "scientists", including landscape ecologists, global change biologists, and habitat specialists have relied on these valuable satellite-based NDVI images for decades. There are public sources of infrared photography for the US available through the Department of Agriculture -- [NAIP](http://datagateway.nrcs.usda.gov/) and [Vegscape](http://nassgeodata.gmu.edu/VegScape/) -- but this imagery is not collected when, as often, or at useable scale for individuals who are managing small plots. ![ndvi-vis-comparison.jpg](/system/images/photos/000/001/289/medium/ndvi-vis-comparison.jpg) Caption: Normal color photo (top) and normalized difference vegetation index (NDVI) image. NDVI image was derived from two color channels in a single photo taken with a camera modified with a special infrared filter. Note that tree trunks, brown grass, and rocks have very low NDVI values because they are not photosynthetic. Healthy plants typically have NDVI values between 0.1 and 0.9. Images by Chris Fastie. Visit the [gallery of high-res images by Chris Fastie](https://plus.google.com/photos/116103622078305917397/albums/5878196749239180465/5878198341400814034) **** ## Frequently Asked Questions Ask a question about infrared imaging [notes:question:infragram] **** ## How to process your images (this section is moved to and updated at http://publiclab.org/wiki/near-infrared-imaging) We're working on an easy process to generate composite, infrared + visible images that will reveal new details of plant health and photosynthesis. There are several approaches: * The **easiest way** is to process your images online at the free, open source [Infragram.org](http://infragram.org) * [Ned Horning's](/profile/nedhorning) [PhotoMonitoring plugin](/wiki/photo-monitoring-plugin) * Manual processing * [in Photoshop](/notes/warren/10-25-2011/video-tutorial-creating-infrared-composites-aerial-wetlands-imagery) * [or GIMP](/notes/warren/10-27-2011/video-tutorial-creating-false-color-ndvi-aerial-wetlands-imagery) * Using MapKnitter.org (deprecated) * Command-line processing of single images and rendering of movies using a Python script. Source code is [here](https://github.com/Pioneer-Valley-Open-Science/infrapix) **Note:** Older versions of this page have been kept at the following wiki page: http://publiclab.org/wiki/near-infrared-camera-history...


Author Comment Last activity Moderation
cfastie "I'm not sure what a Fiji lut file is. Might be binary. I got the values into a tab delimited text file. NDVI_VGYRM-lut.txt And I was able to cir..." | Read more » over 10 years ago
warren "we only accept certain types of files for upload, for security reasons. I can add .lut, is it an image file or a text file? " | Read more » over 10 years ago
cfastie "I will have to see if Fiji can output the values for a lut. Fiji has a GUI lut editor, so I have no idea what the values are. Maybe Ned can help. H..." | Read more » over 10 years ago
warren "Oh cool! do you want to post your LUT in a numeric format so we can post it as an Infragram.org option? The format is: colormap = segmented_color..." | Read more » over 10 years ago
cfastie "Your new Infragram SD4000 seems to have promise. Here is one with my new lut: . " | Read more » over 10 years ago
cfastie "That's a tough one. With the IR blocking filter removed, all three color channels (all pixels, regardless of which color array filter they are unde..." | Read more » over 10 years ago
theowallis "My second lens arrived today and I reluctantly performed the same procedure (with a slight difference) on it. I went out and bought a glass cutter ..." | Read more » over 10 years ago
theowallis "Yeah I'm stumped too. As you said, I can only think it's a loose element inside the remaining lens assembly. I've ordered another lens to repeat th..." | Read more » over 10 years ago
mathew "The sensor is screwed in straight to the lens assembly, so the issue must be some other focus hardware, or a loose piece inside the lense itself. I..." | Read more » over 10 years ago
theowallis "Nothing rattles when I shake the lens but reassembling the case (or any movement/vibration) alters the focus. I haven't installed a new filter yet...." | Read more » over 10 years ago
cfastie "theowallis, Did you add a new filter to replace the IR block filter? Where did you put it? Do you think it is the act of tightening the set screw ..." | Read more » over 10 years ago
warren "Hmm, i once saw this with a different camera, where the filter was helping to pressure the lens into place, and removing it let the lens rock back ..." | Read more » over 10 years ago
theowallis "Just a friendly warning for those of you looking to attempt this conversion, I did this last week, it wasn't too hard to smash the ir blocker out b..." | Read more » over 10 years ago
cfastie "Hi Scott, A Gigapan account is free, although you can pay for commercial features. The minimum limit on all gigapan uploads is 50 megapixels (not m..." | Read more » over 10 years ago
eustatic "chris, how does one create the embedded display you've made in Gigapan. i love the way you can display your photos. I've tried signing up for gig..." | Read more » over 10 years ago
warren "Mathew just had trouble uploading lots of photos too, so perhaps it chokes on large uploads. If you could just upload the one raw image with a red ..." | Read more » over 10 years ago
natalie "I guess. What a pain in the butt. I tried for about an hour to post them at the original size and the wiki just said updating, perpetually and neve..." | Read more » over 10 years ago
mathew "There's an application for linux-- GUVCView that should let you capture full resolution 1200x1600) in the settings. " | Read more » over 10 years ago
warren "Hi, Natalie - thanks for updating, but your photos are really tiny -- is there any way you can post them at full resolution? They look promising, b..." | Read more » over 10 years ago
natalie "Okay check out my updates. @warren, @mathew, @cfastie " | Read more » over 10 years ago
warren "Here are the notes and test photos from when we originally chose the current webcam http://publiclab.org/notes/warren/09-08-2013/infragram-webcam-..." | Read more » over 10 years ago
mathew "white balance is tough-- I only remember control of exposure in UVC. look at these programs: http://publiclab.org/wiki/spectral-workbench-usage#We..." | Read more » over 10 years ago
cfastie "@rway, Ned's plugin for Fiji has always been able to use any of the three channels for either the infrared or visible band when computing NDVI. So ..." | Read more » over 10 years ago
rway "Thanks. " | Read more » over 10 years ago